Variant Gene Risk Allele Score vda Association Type Original DB Sentence supporting the association PMID PMID Year
dbSNP: rs2413739
rs2413739
0.010 GeneticVariation BEFREE The aim of the study was to validate the impact of the single-nucleotide polymorphism rs2413739 (T > C) in the PACSIN2 gene on thiopurines pharmacological parameters and clinical response in an Italian cohort of pediatric patients with acute lymphoblastic leukemia (ALL) and inflammatory bowel disease (IBD). 31792371

2019

dbSNP: rs2292832
rs2292832
0.020 GeneticVariation BEFREE Previous studies have linked miRNA-149 to cancers, and rs2292832 T>C is related to allergic diseases and inflammatory bowel disease, which both show immune system disorders and coronary artery disease. 31785027

2019

dbSNP: rs111033623
rs111033623
0.010 GeneticVariation BEFREE HSCT is the only curative therapy for XLP and this therapy should be urgently considered.What is Known:• SAP and XIAP deficiencies share common clinical feature, HLH, whereas they also have their own specific manifestations.• IBD affects 25-30% of XIAP-deficient patients, which has been reported in other countries especially in European country and Japan.What is New:• This is the largest patient cohort study of XLP in China.• We firstly summarized the clinical features and outcomes of Chinese XIAP-deficient patients and found only 1 in 22 patients developed IBD and diet background may contribute to it; Asian SAP-deficient patients carrying SH2D1A R55X mutation were more prone to HLH. 31754776

2020

dbSNP: rs11209026
rs11209026
0.900 GeneticVariation BEFREE Our meta-analysis demonstrated that the rs11209026 polymorphism might be a protective factor against developing IBD, while the rs10889677 polymorphism might be a risk factor for IBD. 31728561

2020

dbSNP: rs10889677
rs10889677
0.010 GeneticVariation BEFREE Our meta-analysis demonstrated that the rs11209026 polymorphism might be a protective factor against developing IBD, while the rs10889677 polymorphism might be a risk factor for IBD. 31728561

2020

dbSNP: rs2241880
rs2241880
0.070 GeneticVariation BEFREE SNPs rs1800896, rs3024505 (IL-10); rs11209026 (IL23R); rs2066844, rs2066845 (NOD-2), and rs2241880 (ATG16L1) were assessed in 93 patients with IBD and 200 healthy controls by hybridization probes and quantitative PCR. 31651650

2020

dbSNP: rs2097432
rs2097432
0.010 GeneticVariation BEFREE To evaluate the association between HLADQA1*05 and infliximab antibody formation, infliximab loss of response, treatment discontinuation and adverse drug events in patients with inflammatory bowel disease (IBD) METHODS: In a retrospective cohort study, infliximab-exposed patients with IBD (n = 262) were screened for the genetic variation, HLADQA1*05A>G (rs2097432). 31650614

2020

dbSNP: rs7134599
rs7134599
0.810 GeneticVariation BEFREE The significance of these results is amplified by studies suggesting that a single nucleotide polymorphism in IFNG-AS1, rs7134599, was associated with both subtypes of IBD patients independently of race. 31545920

2020

dbSNP: rs3129891
rs3129891
0.010 GeneticVariation BEFREE Mutant genotypes at rs2066844, rs2066845, rs2066847 were not found, and only SNPs rs3129891 and rs77005575 were associated with enteric α-defensin expression in colonic IBD. 31403980

2019

dbSNP: rs77005575
rs77005575
0.010 GeneticVariation BEFREE Mutant genotypes at rs2066844, rs2066845, rs2066847 were not found, and only SNPs rs3129891 and rs77005575 were associated with enteric α-defensin expression in colonic IBD. 31403980

2019

dbSNP: rs34436714
rs34436714
0.010 GeneticVariation BEFREE Association between genotypes of rs34436714 of NLRP12 and serum tumor necrosis factor-alpha in inflammatory bowel disease: A case-control study. 31169706

2019

dbSNP: rs77375493
rs77375493
0.010 GeneticVariation BEFREE Moreover, despite the absence of JAK2 V617F mutation in patients with IBD, the increased gene expression of JAK2 can be explained by another molecular mechanism such as regulation of gene expression at the transcriptional level which may play crucial roles in the pathogenesis of IBD. 31069840

2019

dbSNP: rs116855232
rs116855232
0.750 GeneticVariation BEFREE Our results indicate that careful monitoring of leukopenia and dose adjustment are necessary throughout treatment in IBD patients heterozygous for the NUDT15 R139C. 31045285

2019

dbSNP: rs731236
rs731236
VDR
0.020 GeneticVariation BEFREE The aim of this study was to investigate the association of the TaqI polymorphism (rs731236, c.1056T >C) in the VDR gene with serum vitamin D concentration and bone mineral density (BMD) in patients with IBD. 30929318

2019

dbSNP: rs6271
rs6271
0.010 GeneticVariation BEFREE A single non-synonymous SNP, rs6271 (Arg549Cys), had a significant association with IBD patients; the odds ratio was a 5.6 times higher SNP frequency in IBD patients compared to controls (p = 0.002). 30817802

2019

dbSNP: rs11969064
rs11969064
0.700 GeneticVariation GWASCAT Association of Genetic Variants in NUDT15 With Thiopurine-Induced Myelosuppression in Patients With Inflammatory Bowel Disease. 30806694

2019

dbSNP: rs4986790
rs4986790
0.100 GeneticVariation BEFREE Moreover, the TLR4 rs4986790 polymorphism was significantly correlated with the risk of IBD in West Asians, while the TLR9 rs352140 polymorphism was significantly associated with the risk of IBD in Africans. 30617966

2019

dbSNP: rs352140
rs352140
0.020 GeneticVariation BEFREE Moreover, the TLR4 rs4986790 polymorphism was significantly correlated with the risk of IBD in West Asians, while the TLR9 rs352140 polymorphism was significantly associated with the risk of IBD in Africans. 30617966

2019

dbSNP: rs5743611
rs5743611
0.010 GeneticVariation BEFREE Significant associations with the risk of IBD were detected for the TLR1 rs5743611, TLR4 rs4986790, TLR4 rs4986791, and TLR6 rs5743810 polymorphisms in overall analyses. 30617966

2019

dbSNP: rs5743810
rs5743810
0.010 GeneticVariation BEFREE Further subgroup analyses according to ethnicity of participants revealed that the TLR1 rs5743611, TLR4 rs4986790, TLR4 rs4986791, TLR6 rs5743810, and TLR9 rs352140 polymorphisms were significantly associated with the risk of IBD in Caucasians. 30617966

2019

dbSNP: rs8005161
rs8005161
0.810 GeneticVariation BEFREE The T allele of rs8005161 might confer a more severe disease course in IBD patients. 30616622

2019

dbSNP: rs601338
rs601338
0.020 GeneticVariation BEFREE CONCLUSIONS Fucosyltransferase 2 gene (rs601338) polymorphism is associated with susceptibility to IBD, UC, and CD in the Chinese population, but these results might not be generalizable to other ethnic populations. 30615603

2019

dbSNP: rs6795970
rs6795970
0.010 GeneticVariation BEFREE The allelic frequency of only one non-synonymous SNP (rs6795970 [<i>SCN10A</i>]) approached significance in hypoalgesic IBD patients when compared to other IBD patients (<i>p</i> = 0.096, Fisher's exact test). 30538988

2018

dbSNP: rs2241880
rs2241880
0.070 GeneticVariation BEFREE Cells harbouring the ATG16L1 T300A allele associated with inflammatory bowel disease were also found to accumulate cholesterol and be defective in repair, linking a common inflammatory disease to plasma membrane integrity. 30478389

2018

dbSNP: rs10500264
rs10500264
0.820 GeneticVariation BEFREE One SNP (rs4986791 in the TLR-4 locus) and 2 SNPs (rs6785049 in the Pregnane-x-receptor gene and rs10500264 in the SLCA10 gene) were associated with a change in albumin and hemoglobin over time respectively in our IBD cohort. 30423580

2019